Central Nervous System Cancer
Automatic and standardized surgical reporting for central nervous system tumors
Bouget, David, Faanes, Mathilde Gajda, Jakola, Asgeir Store, Barkhof, Frederik, Ardon, Hilko, Bello, Lorenzo, Berger, Mitchel S., Hervey-Jumper, Shawn L., Furtner, Julia, Idema, Albert J. S., Kiesel, Barbara, Widhalm, Georg, Tewarie, Rishi Nandoe, Mandonnet, Emmanuel, Robe, Pierre A., Wagemakers, Michiel, Smith, Timothy R., Hamer, Philip C. De Witt, solheim, Ole, Reinertsen, Ingerid
Magnetic resonance (MR) imaging is essential for evaluating central nervous system (CNS) tumors, guiding surgical planning, treatment decisions, and assessing postoperative outcomes and complication risks. While recent work has advanced automated tumor segmentation and report generation, most efforts have focused on preoperative data, with limited attention to postoperative imaging analysis. This study introduces a comprehensive pipeline for standardized postsurtical reporting in CNS tumors. Using the Attention U-Net architecture, segmentation models were trained for the preoperative (non-enhancing) tumor core, postoperative contrast-enhancing residual tumor, and resection cavity. Additionally, MR sequence classification and tumor type identification for contrast-enhancing lesions were explored using the DenseNet architecture. The models were integrated into a reporting pipeline, following the RANO 2.0 guidelines. Training was conducted on multicentric datasets comprising 2000 to 7000 patients, using a 5-fold cross-validation. Evaluation included patient-, voxel-, and object-wise metrics, with benchmarking against the latest BraTS challenge results. The segmentation models achieved average voxel-wise Dice scores of 87%, 66%, 70%, and 77% for the tumor core, non-enhancing tumor core, contrast-enhancing residual tumor, and resection cavity, respectively. Classification models reached 99.5% balanced accuracy in MR sequence classification and 80% in tumor type classification. The pipeline presented in this study enables robust, automated segmentation, MR sequence classification, and standardized report generation aligned with RANO 2.0 guidelines, enhancing postoperative evaluation and clinical decision-making. The proposed models and methods were integrated into Raidionics, open-source software platform for CNS tumor analysis, now including a dedicated module for postsurgical analysis.
- North America > United States > California > San Francisco County > San Francisco (0.14)
- Europe > Sweden > Vaestra Goetaland > Gothenburg (0.14)
- Europe > Austria > Vienna (0.14)
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- Research Report > Experimental Study (0.45)
- Research Report > New Finding (0.34)
- Health & Medicine > Therapeutic Area > Oncology > Central Nervous System Cancer (1.00)
- Health & Medicine > Therapeutic Area > Neurology (1.00)
Prediction of Rapid Early Progression and Survival Risk with Pre-Radiation MRI in WHO Grade 4 Glioma Patients
Farzana, Walia, Basree, Mustafa M, Diawara, Norou, Shboul, Zeina A., Dubey, Sagel, Lockhart, Marie M, Hamza, Mohamed, Palmer, Joshua D., Iftekharuddin, Khan M.
Recent clinical research describes a subset of glioblastoma patients that exhibit REP prior to start of radiation therapy. Current literature has thus far described this population using clinicopathologic features. To our knowledge, this study is the first to investigate the potential of conventional ra-diomics, sophisticated multi-resolution fractal texture features, and different molecular features (MGMT, IDH mutations) as a diagnostic and prognostic tool for prediction of REP from non-REP cases using computational and statistical modeling methods. Radiation-planning T1 post-contrast (T1C) MRI sequences of 70 patients are analyzed. Ensemble method with 5-fold cross validation over 1000 iterations offers AUC of 0.793 with standard deviation of 0.082 for REP and non-REP classification. In addition, copula-based modeling under dependent censoring (where a subset of the patients may not be followed up until death) identifies significant features (p-value <0.05) for survival probability and prognostic grouping of patient cases. The prediction of survival for the patients cohort produces precision of 0.881 with standard deviation of 0.056. The prognostic index (PI) calculated using the fused features suggests that 84.62% of REP cases fall under the bad prognostic group, suggesting potentiality of fused features to predict a higher percentage of REP cases. The experimental result further shows that mul-ti-resolution fractal texture features perform better than conventional radiomics features for REP and survival outcomes.
- Europe > Switzerland > Basel-City > Basel (0.05)
- North America > United States > Ohio > Franklin County > Columbus (0.04)
- North America > United States > Virginia > Norfolk City County > Norfolk (0.04)
- (2 more...)
- Research Report > New Finding (1.00)
- Research Report > Experimental Study (1.00)
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Therapeutic Area > Oncology > Brain Cancer (0.50)
- Health & Medicine > Therapeutic Area > Oncology > Central Nervous System Cancer (0.46)
- Health & Medicine > Therapeutic Area > Oncology > Childhood Cancer (0.36)
Raidionics: an open software for pre- and postoperative central nervous system tumor segmentation and standardized reporting
Bouget, David, Alsinan, Demah, Gaitan, Valeria, Helland, Ragnhild Holden, Pedersen, André, Solheim, Ole, Reinertsen, Ingerid
For patients suffering from central nervous system tumors, prognosis estimation, treatment decisions, and postoperative assessments are made from the analysis of a set of magnetic resonance (MR) scans. Currently, the lack of open tools for standardized and automatic tumor segmentation and generation of clinical reports, incorporating relevant tumor characteristics, leads to potential risks from inherent decisions' subjectivity. To tackle this problem, the proposed Raidionics open-source software has been developed, offering both a user-friendly graphical user interface and stable processing backend. The software includes preoperative segmentation models for each of the most common tumor types (i.e., glioblastomas, lower grade gliomas, meningiomas, and metastases), together with one early postoperative glioblastoma segmentation model. Preoperative segmentation performances were quite homogeneous across the four different brain tumor types, with an average Dice around 85% and patient-wise recall and precision around 95%. Postoperatively, performances were lower with an average Dice of 41%. Overall, the generation of a standardized clinical report, including the tumor segmentation and features computation, requires about ten minutes on a regular laptop. The proposed Raidionics software is the first open solution enabling an easy use of state-of-the-art segmentation models for all major tumor types, including preoperative and postsurgical standardized reports.
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Therapeutic Area > Oncology > Central Nervous System Cancer (0.72)
- Health & Medicine > Therapeutic Area > Oncology > Brain Cancer (0.71)
- Health & Medicine > Therapeutic Area > Oncology > Childhood Cancer (0.56)
- Information Technology > Software (1.00)
- Information Technology > Human Computer Interaction > Interfaces (1.00)
- Information Technology > Artificial Intelligence > Machine Learning > Neural Networks > Deep Learning (1.00)
- Information Technology > Artificial Intelligence > Machine Learning > Performance Analysis > Accuracy (0.88)